Genome Property Definition Page
| Accession | GenProp0258 |
| Name | tRNA aminoacylation |
| Type | GUILD |
| Description | In all species, it is presumed that tRNA molecules for all 20 common amino acids exist are become charged with the correct amino acid. Most are changed directly by a known ligase that is a single polypeptide chain, but not all. |
| JCVI Role | tRNA aminoacylation |
| Parent Property | GenProp0197: protein biosynthesis GenProp0819: RNA metabolism |
Components
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms | Branch |
|---|---|---|---|---|---|
| alanyl-tRNA synthetase | Ala | YES | TIGR00344 (HMM): alanine--tRNA ligase | 1 | |
| arginyl-tRNA synthetase | Arg | YES | TIGR00456 (HMM): arginine--tRNA ligase PF00750 (HMM): arginine--tRNA ligase | 1 | |
| Asn direct aminoacylation | Asn_dir | YES | TIGR00457 (HMM): asparagine--tRNA ligase | Asn_dir | |
| aspartyl-tRNA synthetase | Asp | YES | TIGR00458 (HMM): aspartate--tRNA(Asn) ligase TIGR00459 (HMM): aspartate--tRNA ligase | 1 | |
| cysteinyl-tRNA synthetase | Cys | YES | TIGR00435 (HMM): cysteine--tRNA ligase | 1 | |
| Gln direct aminoacylation | Gln_dir | YES | TIGR00440 (HMM): glutamine--tRNA ligase | Gln_dir | |
| glutamyl-tRNA synthetase | Glu | YES | TIGR00464 (HMM): glutamate--tRNA ligase TIGR00463 (HMM): glutamate--tRNA ligase | 1 | |
| glycyl-tRNA synthetase, alpha subunit | Gly_A | YES | TIGR00388 (HMM): glycine--tRNA ligase, alpha subunit | Gly_AB | |
| glycyl-tRNA synthetase, beta subunit | Gly_B | YES | TIGR00211 (HMM): glycine--tRNA ligase, beta subunit | Gly_AB | |
| glycyl-tRNA synthetase | Gly_hom | YES | TIGR00389 (HMM): glycine--tRNA ligase | Gly_hom | |
| histidyl-tRNA synthetase | His | YES | TIGR00442 (HMM): histidine--tRNA ligase | 1 | |
| isoleucyl-tRNA synthetase | Ile | YES | TIGR00392 (HMM): isoleucine--tRNA ligase | 1 | |
| leucyl-tRNA synthetase | Leu | YES | TIGR00395 (HMM): leucine--tRNA ligase TIGR00396 (HMM): leucine--tRNA ligase | 1 | |
| lysyl-tRNA synthetase | Lys | YES | TIGR00467 (HMM): lysine--tRNA ligase TIGR00499 (HMM): lysine--tRNA ligase | 1 | |
| methionyl-tRNA synthetase | Met | YES | TIGR00398 (HMM): methionine--tRNA ligase | 1 | |
| methionyl-tRNA synthetase, beta subunit | Met_Bet | NO | TIGR00399 (HMM): methionine--tRNA ligase, beta subunit | 1 | |
| phenylalanyl-tRNA synthetase, alpha subunit | Phe_A | YES | TIGR00468 (HMM): phenylalanine--tRNA ligase, alpha subunit | 1 | |
| phenylalanyl-tRNA synthetase, beta subunit | Phe_B | YES | TIGR00471 (HMM): phenylalanine--tRNA ligase, beta subunit TIGR00472 (HMM): phenylalanine--tRNA ligase, beta subunit | 1 | |
| prolyl-tRNA synthetase | Pro | YES | TIGR00408 (HMM): proline--tRNA ligase TIGR00409 (HMM): proline--tRNA ligase | 1 | |
| seryl-tRNA synthetase | Ser | YES | TIGR00414 (HMM): serine--tRNA ligase TIGR00415 (HMM): serine--tRNA ligase | 1 | |
| threonyl-tRNA synthetase | Thr | YES | TIGR00418 (HMM): threonine--tRNA ligase | 1 | |
| tryptophanyl-tRNA synthetase | Trp | YES | TIGR00233 (HMM): tryptophan--tRNA ligase | 1 | |
| tyrosyl-tRNA synthetase | Tyr | YES | TIGR00234 (HMM): tyrosine--tRNA ligase | 1 | |
| valyl-tRNA synthetase | Val | YES | TIGR00422 (HMM): valine--tRNA ligase | 1 | |
| GatA subunit, glutamyl-tRNA(Gln) amidotransferase | gatA | YES | TIGR00132 (HMM): aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit | gln_ami | |
| GatA as aspartyl-tRNA(Asn) complex candidate | gatA_N | YES | TIGR00132 (HMM): aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit | asp_ami | |
| GatB subunit, glutamyl-tRNA(Gln) amidotransferase | gatB | YES | TIGR00133 (HMM): aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit | gln_ami | |
| GatB as aspartyl-tRNA(Asn) complex candidate | gatB_N | YES | TIGR00133 (HMM): aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit | asp_ami | |
| GatC subunit, glutamyl-tRNA(Gln) amidotransferase | gatC | YES | TIGR00135 (HMM): aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit | gln_ami | |
| GatC as aspartyl-tRNA(Asn) complex candidate | gatC_N | YES | TIGR00135 (HMM): aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit | asp_ami | |
| gatD subunit, archaeal glutamyl-tRNA(Gln) amidotransferase | gatD | YES | TIGR02153 (HMM): glutamyl-tRNA(Gln) amidotransferase, subunit D | gln_arc | |
| gatE subunit, archaeal glutamyl-tRNA(Gln) amidotransferase | gatE | YES | TIGR00134 (HMM): glutamyl-tRNA(Gln) amidotransferase, subunit E | gln_arc |
Parent Properties
| Accession | Name |
|---|---|
| GenProp0197 | protein biosynthesis |
| GenProp0819 | RNA metabolism |
Child Properties
| Accession | Name |
|---|---|
| GenProp0188 | GatABC aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase complex |
| GenProp0189 | tRNA-Gln direct aminoacylation |
| GenProp0259 | tRNA-Asn direct aminoacylation |
Sibling Properties
| Accession | Name |
|---|---|
| GenProp0016 | selenocysteine system |
| GenProp0312 | pyrrolysine |
| GenProp0132 | transcription termination - antitermination Nus factors |
| GenProp0148 | release factor 2 programmed frameshift |
| GenProp0174 | ribosome, bacterial, large subunit |
| GenProp0175 | ribosome, bacterial, small subunit |
| GenProp0188 | GatABC aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase complex |
| GenProp0189 | tRNA-Gln direct aminoacylation |
| GenProp0211 | tmRNA trans-translation system |
| GenProp0259 | tRNA-Asn direct aminoacylation |
| GenProp0304 | cysteine biosynthesis, tRNA-dependent |
| GenProp0634 | Sigma-54 (RpoN) systems |
| GenProp0692 | selenouridine-containing tRNA |
| GenProp0704 | tRNA U34 carboxymethylaminomethyl modification |
| GenProp0740 | translation initiation, bacterial |
| GenProp0741 | translation elongation, bacterial |
| GenProp0746 | translation termination, bacterial |
| GenProp0812 | rho-dependent termination |
| GenProp0262 | RNA polymerase, bacterial |
| GenProp0482 | 6S RNA (eubacterial RNA polymerase regulator) |
| GenProp0677 | queuosine (Q-tRNA) biosynthesis from preQ0 |
| GenProp0898 | RNA ligase/unknown protein pair |
| GenProp0948 | RNA repair, Hen1/Pnkp system |
| GenProp1060 | tRNA N6-threonylcarbamoyladenosine modification |
| GenProp1077 | tRNA(Pro) cmo5UGG modification |
| GenProp1082 | 16S rRNA C1402 m(4)Cm modification |