Genome Property Definition Page

Accession

GenProp0175

Name

ribosome, bacterial, small subunit

Type

SYSTEM

Description

Ribosome, bacterial, small subunit. This property allows HMMs specific for ribosomal proteins to be tested in phylogenetic profiles

JCVI Role

Ribosomal proteins: synthesis and modification

Parent Property

GenProp0197: protein biosynthesis

Literature References

[ 1 ]Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, Ramakrishnan V, Spahn CM, Steitz TA, Tchorzewski M, Tollervey D, Warren AJ, Williamson JR, Wilso A new system for naming ribosomal proteins. Curr Opin Struct Biol. 2014 Feb;24:165-9. doi: 10.1016/j.sbi.2014.01.002. PMID 24524803

Components

Step Name	Step Num	Required	Evidence (Method)
S1	bS1	NO	TIGR00717 (HMM): ribosomal protein bS1
S16	bS16	YES	TIGR00002 (HMM): ribosomal protein bS16
S18	bS18	YES	TIGR00165 (HMM): ribosomal protein bS18
S20	bS20	YES	TIGR00029 (HMM): ribosomal protein bS20
S21	bS21	NO	TIGR00030 (HMM): ribosomal protein bS21
S6	bS6	YES	TIGR00166 (HMM): ribosomal protein bS6
THX	bTHX	NO	TIGR04560 (HMM): ribosomal small subunit protein bTHX
S10	uS10	YES	TIGR01049 (HMM): ribosomal protein uS10
S11	uS11	YES	PF00411 (HMM): ribosomal protein uS11
S12	uS12	YES	TIGR00981 (HMM): ribosomal protein uS12
S13	uS13	YES	PF00416 (HMM): ribosomal protein uS13
S14	uS14	YES	PF00253 (HMM): ribosomal protein uS14
S15	uS15	YES	TIGR00952 (HMM): ribosomal protein uS15
S17	uS17	YES	PF00366 (HMM): ribosomal protein uS17
S19	uS19	YES	TIGR01050 (HMM): ribosomal protein uS19
S2	uS2	YES	TIGR01011 (HMM): ribosomal protein uS2
S3	uS3	YES	TIGR01009 (HMM): ribosomal protein uS3
S4	uS4	YES	TIGR01017 (HMM): ribosomal protein uS4
S5	uS5	YES	TIGR01021 (HMM): ribosomal protein uS5
S7	uS7	YES	TIGR01029 (HMM): ribosomal protein uS7
S8	uS8	YES	PF00410 (HMM): ribosomal protein uS8
S9	uS9	YES	PF00380 (HMM): ribosomal protein uS9

Parent Properties

Accession	Name
GenProp0197	protein biosynthesis

Sibling Properties

Accession	Name
GenProp0016	selenocysteine system
GenProp0312	pyrrolysine
GenProp0132	transcription termination - antitermination Nus factors
GenProp0148	release factor 2 programmed frameshift
GenProp0174	ribosome, bacterial, large subunit
GenProp0188	GatABC aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase complex
GenProp0189	tRNA-Gln direct aminoacylation
GenProp0211	tmRNA trans-translation system
GenProp0258	tRNA aminoacylation
GenProp0259	tRNA-Asn direct aminoacylation
GenProp0304	cysteine biosynthesis, tRNA-dependent
GenProp0634	Sigma-54 (RpoN) systems
GenProp0692	selenouridine-containing tRNA
GenProp0704	tRNA U34 carboxymethylaminomethyl modification
GenProp0740	translation initiation, bacterial
GenProp0741	translation elongation, bacterial
GenProp0746	translation termination, bacterial
GenProp0812	rho-dependent termination