Genome Property Definition Page

Accession

GenProp0174

Name

ribosome, bacterial, large subunit

Type

SYSTEM

Description

Ribosome, bacterial, large subunit. This genome property now follows a revised nomenclature from February 2014.

JCVI Role

Ribosomal proteins: synthesis and modification

Parent Property

GenProp0197: protein biosynthesis

Literature References

[ 1 ]Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, Ramakrishnan V, Spahn CM, Steitz TA, Tchorzewski M, Tollervey D, Warren AJ, Williamson JR, Wilso A new system for naming ribosomal proteins. Curr Opin Struct Biol. 2014 Feb;24:165-9. doi: 10.1016/j.sbi.2014.01.002. PMID 24524803

Components

Step Name	Step Num	Required	Evidence (Method)
L7/12	bL12	YES	TIGR00855 (HMM): ribosomal protein bL12
L17	bL17	YES	TIGR00059 (HMM): ribosomal protein bL17
L19	bL19	YES	TIGR01024 (HMM): ribosomal protein bL19
L20	bL20	YES	TIGR01032 (HMM): ribosomal protein bL20
L21	bL21	YES	TIGR00061 (HMM): ribosomal protein bL21
L25	bL25	NO	PF01386 (HMM): ribosomal protein bL25
L27	bL27	YES	TIGR00062 (HMM): ribosomal protein bL27
L28	bL28	YES	TIGR00009 (HMM): ribosomal protein bL28
L31	bL31	YES	TIGR00105 (HMM): ribosomal protein bL31
L32	bL32	YES	TIGR01031 (HMM): ribosomal protein bL32
L33	bL33	YES	TIGR01023 (HMM): ribosomal protein bL33
L34	bL34	YES	TIGR01030 (HMM): ribosomal protein bL34
L35	bL35	YES	TIGR00001 (HMM): ribosomal protein bL35
L36	bL36	YES	TIGR01022 (HMM): ribosomal protein bL36
L9	bL9	YES	TIGR00158 (HMM): ribosomal protein bL9
L1	uL1	YES	TIGR01169 (HMM): ribosomal protein uL1
L10	uL10	YES	PF00466 (HMM): ribosomal protein uL10
L11	uL11	YES	TIGR01632 (HMM): ribosomal protein uL11
L13	uL13	YES	TIGR01066 (HMM): ribosomal protein uL13
L14	uL14	YES	TIGR01067 (HMM): ribosomal protein uL14
L15	uL15	YES	TIGR01071 (HMM): ribosomal protein uL15
L16	uL16	YES	TIGR01164 (HMM): ribosomal protein uL16
L18	uL18	YES	TIGR00060 (HMM): ribosomal protein uL18
L2	uL2	YES	TIGR01171 (HMM): ribosomal protein uL2
L22	uL22	YES	TIGR01044 (HMM): ribosomal protein uL22
L23	uL23	YES	PF00276 (HMM): ribosomal protein uL23
L24	uL24	YES	TIGR01079 (HMM): ribosomal protein uL24
L29	uL29	YES	TIGR00012 (HMM): ribosomal protein uL29
L3	uL3	YES	PF00297 (HMM): ribosomal protein uL3
L30	uL30	NO	TIGR01308 (HMM): ribosomal protein uL30
L4	uL4	YES	PF00573 (HMM): ribosomal protein uL4
L5	uL5	YES	PF00281 (HMM): ribosomal protein uL5
L6	uL6	YES	PF00347 (HMM): ribosomal protein uL6

Parent Properties

Accession	Name
GenProp0197	protein biosynthesis

Sibling Properties

Accession	Name
GenProp0016	selenocysteine system
GenProp0312	pyrrolysine
GenProp0132	transcription termination - antitermination Nus factors
GenProp0148	release factor 2 programmed frameshift
GenProp0175	ribosome, bacterial, small subunit
GenProp0188	GatABC aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase complex
GenProp0189	tRNA-Gln direct aminoacylation
GenProp0211	tmRNA trans-translation system
GenProp0258	tRNA aminoacylation
GenProp0259	tRNA-Asn direct aminoacylation
GenProp0304	cysteine biosynthesis, tRNA-dependent
GenProp0634	Sigma-54 (RpoN) systems
GenProp0692	selenouridine-containing tRNA
GenProp0704	tRNA U34 carboxymethylaminomethyl modification
GenProp0740	translation initiation, bacterial
GenProp0741	translation elongation, bacterial
GenProp0746	translation termination, bacterial
GenProp0812	rho-dependent termination