Genome Property Definition Page
Accession | GenProp0807 | |
Name | bacteriocin system, heterocycle biosynthesis group | |
Type | GUILD | |
Description | This Genome Property is a working space for the guild of bacteriocin production, focusing on heterocycle-containing in the style of the SagA system of S. pyogenes. Sets of proteins performing various chemistries sit nearby, most failing to form cliques among related proteins that could serve as markers. However, some narrow-scope, high-precision search models (HMM or BrainGrab) will make strong identifications on some components. See the article "Discovery of a widely distributed toxin biosynthetic gene cluster.", PMID: 18375757 | |
JCVI Role | Toxin production and resistance | |
Parent Property | GenProp0077: natural products biosynthesis | |
Literature References |
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Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
cyclodehydratase(SagC) | cyclode | YES | TIGR03603 (HMM): thiazole/oxazole-forming peptide maturase, SagC family component 2374 (RULE_BASE) TIGR03882 (HMM): bacteriocin biosynthesis cyclodehydratase domain | |
SagB-type dehydrogenase domain | dehyd | YES | TIGR03605 (HMM): SagB-type dehydrogenase domain | |
docking scaffold protein | docking | YES | TIGR03604 (HMM): thiazole/oxazole-forming peptide maturase, SagD family component | |
heterocyclic bacteriocin protoxin | protox | YES | TIGR03601 (HMM): bacteriocin, heterocycloanthracin/sonorensin family TIGR03602 (HMM): bacteriocin protoxin, streptolysin S family TIGR03678 (HMM): bacteriocin leader peptide, microcyclamide/patellamide family TIGR03793 (HMM): NHLP leader peptide domain TIGR03798 (HMM): nif11-like leader peptide domain TIGR03892 (HMM): thiazolylpeptide-type bacteriocin precursor |
Parent Properties
Accession | Name |
---|---|
GenProp0077 | natural products biosynthesis |
Sibling Properties
Accession | Name |
---|---|
GenProp0014 | polyketide biosynthesis, type I |
GenProp0015 | polyketide biosynthesis, type II |
GenProp0040 | thiotemplate type non-ribosomal peptide biosynthesis |
GenProp0169 | hybrid NRPS-PKS natural pruduct biosynthesis genes |
GenProp0724 | phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate |
GenProp0757 | quorum-sensing, autoinducer-2 system |
GenProp0758 | lycopene biosynthesis from IPP |
GenProp0770 | siderophore biosynthesis |
GenProp0808 | bacteriocin system, TIGR01847 leader group |
GenProp0809 | bacteriocin system, lactococcin 972 group |
GenProp0823 | violacein biosynthesis |
GenProp0825 | bacteriocin system, circular bacteriocin group |
GenProp0853 | lantibiotic system, gallidermin/epidermin family |
GenProp0861 | bacteriocin system, NHLP (nif11/nitrile hydratase leader peptide) transport group |
GenProp0901 | post-ribosomal natural product synthesis system, Burkholderia TOMM-type |
GenProp0919 | SCIFF/radical SAM Clostridial gene pair |
GenProp0920 | radical SAM Y_X(10)_GDL system |
GenProp0921 | radical SAM pair and His-Xaa-Ser repeats peptide |
GenProp0936 | bacteriocin system, sporulation delay protein group |
GenProp0945 | radical SAM maturase bacteriocin system, CLI_3235 type |
GenProp0954 | radical SAM-cylized peptide, Pep1357C family |
GenProp0955 | modified peptide/radical SAM maturase system, YydFG family |
GenProp0956 | radical SAM maturase/selenobacteriocin system |
GenProp0962 | methanobactin biosynthesis, Mb-OB3b family |
GenProp0967 | radical SAM maturase system, CXXX repeats type |
GenProp0982 | radical SAM maturase system, FibroRumin system |
GenProp0984 | radical SAM maturase system, GG-Bacteroidales group |
GenProp0990 | cobaltopeptin biosynthesis |
GenProp0991 | ATP-grasp maturase system, microviridin/marinostatin class |
GenProp1000 | ATP-grasp maturase system, uncharacterized |
GenProp1002 | grasp-with-spasm peptide maturase system |
GenProp1003 | cysteine S-glycopeptide biosynthesis, sublancin family |
GenProp1029 | radical SAM/SPASM system SynChlorMet |
GenProp1037 | radical SAM/SPASM system GRRM |
GenProp1052 | geopeptide radical SAM/SPASM maturase system |
GenProp1062 | radical SAM/SPASM system Clo7bot |
GenProp1065 | radical SAM/SPASM TIGR04347/TIGR04031 system |
GenProp1078 | sporulation killing factor system |
GenProp1083 | cyanobactin-like ribosomal natural product biosynthesis |
GenProp1084 | enduracididine biosynthesis |
GenProp1090 | radical SAM/SPASM maturase system XYE |
GenProp1097 | bacimethrin biosynthesis |
GenProp1098 | 3-methylarginine biosynthesis |