Genome Property Definition Page

Namebacteriocin system, sporulation delay protein group
DescriptionThis Genome Property describes a three-gene system of antimicrobial peptide and two export proteins modeled on SdpC (sporulation delay protein C) from Bacillus subtilis, a killing peptide that allows cannibalism to obtain nutrients and avoid the irreversible sporulation cascade. Related systems are sparsely but widely distributed. Additional components of the SdpABC system itself, such as immunity protein SdpI and regulatory proteins, were not recognized as universal to such systems by phylogenetic profiling mechanisms and are not modeled within this Genome Property.
JCVI RoleToxin production and resistance
Parent PropertyGenProp0077: natural products biosynthesis
Literature References
[ 1 ]Lopez D, Vlamakis H, Losick R, Kolter R  Cannibalism enhances biofilm development in Bacillus subtilis.  Mol Microbiol. 2009 Nov;74(3):609-18. Epub 2009 Sep 22.  PMID 19775247
Gene Ontology TermGO:0030152: bacteriocin biosynthetic process (biological_process)

Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
antimicrobial peptide system protein, SdpA familySdpAYESTIGR04034 (HMM): antimicrobial peptide system protein, SdpA familyGO:0030152: bacteriocin biosynthetic process
antimicrobial peptide system protein, SdpB familySdpBYESTIGR04033 (HMM): antimicrobial peptide system protein, SdpB familyGO:0030152: bacteriocin biosynthetic process
antimicrobial peptide, SdpC familySdpCYESTIGR04032 (HMM): antimicrobial peptide, SdpC familyGO:0030152: bacteriocin biosynthetic process

Parent Properties
GenProp0077natural products biosynthesis

Sibling Properties
GenProp0014polyketide biosynthesis, type I
GenProp0015polyketide biosynthesis, type II
GenProp0040thiotemplate type non-ribosomal peptide biosynthesis
GenProp0169hybrid NRPS-PKS natural pruduct biosynthesis genes
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0757quorum-sensing, autoinducer-2 system
GenProp0758lycopene biosynthesis from IPP
GenProp0770siderophore biosynthesis
GenProp0807bacteriocin system, heterocycle biosynthesis group
GenProp0808bacteriocin system, TIGR01847 leader group
GenProp0809bacteriocin system, lactococcin 972 group
GenProp0823violacein biosynthesis
GenProp0825bacteriocin system, circular bacteriocin group
GenProp0853lantibiotic system, gallidermin/epidermin family
GenProp0861bacteriocin system, NHLP (nif11/nitrile hydratase leader peptide) transport group
GenProp0901post-ribosomal natural product synthesis system, Burkholderia TOMM-type
GenProp0919SCIFF/radical SAM Clostridial gene pair
GenProp0920radical SAM Y_X(10)_GDL system
GenProp0921radical SAM pair and His-Xaa-Ser repeats peptide
GenProp0945radical SAM maturase bacteriocin system, CLI_3235 type
GenProp0954radical SAM-cylized peptide, Pep1357C family
GenProp0955modified peptide/radical SAM maturase system, YydFG family
GenProp0956radical SAM maturase/selenobacteriocin system
GenProp0962methanobactin biosynthesis, Mb-OB3b family
GenProp0967radical SAM maturase system, CXXX repeats type
GenProp0982radical SAM maturase system, FibroRumin system
GenProp0984radical SAM maturase system, GG-Bacteroidales group
GenProp0990cobaltopeptin biosynthesis
GenProp0991ATP-grasp maturase system, microviridin/marinostatin class
GenProp1000ATP-grasp maturase system, uncharacterized
GenProp1002grasp-with-spasm peptide maturase system
GenProp1003cysteine S-glycopeptide biosynthesis, sublancin family
GenProp1029radical SAM/SPASM system SynChlorMet
GenProp1037radical SAM/SPASM system GRRM
GenProp1052geopeptide radical SAM/SPASM maturase system
GenProp1062radical SAM/SPASM system Clo7bot
GenProp1065radical SAM/SPASM TIGR04347/TIGR04031 system
GenProp1078sporulation killing factor system
GenProp1083cyanobactin-like ribosomal natural product biosynthesis
GenProp1084enduracididine biosynthesis
GenProp1090radical SAM/SPASM maturase system XYE
GenProp1097bacimethrin biosynthesis
GenProp10983-methylarginine biosynthesis