Genome Property Definition Page
| Accession | GenProp1053 |
| Name | rSAM/selenodomain system |
| Type | SYSTEM |
| Description | In this uncharacterized system, the radical SAM domain protein (see TIGR04167) has a Cys-rich suffix domain modeled by PF12345. In at least eight reference genomes, one Cys is replaced by selenocysteine, suggesting enzymatic activity and a distinctive role. In a large number of genomes, the radical SAM enzyme is co-clustered with a member of family TIGR04169. |
| Parent Property | GenProp0063: biosynthesis |
Components
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
|---|---|---|---|---|
| phosphoesterase family protein | P_ester | NO | TIGR04168 (HMM): TIGR04168 family protein | |
| putative glycosyltransferase, CofC-like | glycCof | YES | TIGR04282 (HMM): transferase 1, rSAM/selenodomain-associated | |
| putative glycosyltransferase, MftF-like | glycMft | YES | TIGR04283 (HMM): transferase 2, rSAM/selenodomain-associated | |
| alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein | peroxFam | YES | TIGR04169 (HMM): alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein | |
| radical SAM/selenodomain protein | rSAM_SeC | YES | TIGR04167 (HMM): radical SAM/Cys-rich domain protein |
Parent Properties
| Accession | Name |
|---|---|
| GenProp0063 | biosynthesis |
Sibling Properties
| Accession | Name |
|---|---|
| GenProp0077 | natural products biosynthesis |
| GenProp0126 | amino acid biosynthesis |
| GenProp0184 | cofactor biosynthesis |
| GenProp0185 | nucleotide biosynthesis |
| GenProp0186 | storage and structural polymer biosynthesis |
| GenProp0197 | protein biosynthesis |
| GenProp0219 | spermidine biosynthesis from arginine (via agmatine) |
| GenProp0267 | osmolyte biosynthesis |
| GenProp0641 | spermidine biosynthesis from putrescine and S-adenosylmethionine |
| GenProp0642 | putrescine biosynthesis from arginine utilizing agmatinase |
| GenProp0643 | putrescine biosynthesis from arginine via ornithine |
| GenProp0644 | putrescine biosynthesis from glutamate via ornithine |
| GenProp0645 | putrescine biosynthesis |
| GenProp0724 | phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate |
| GenProp0738 | agmatine to putrescine via N-carbamoylputrescine |
| GenProp0795 | carbohydrate biosynthesis |
| GenProp0838 | lipid biosynthesis |
| GenProp0909 | capreomycidine biosynthesis |
| GenProp0942 | alkane biosynthesis, cyanobacterial |
| GenProp1056 | rhizo-twelve system |
| GenProp1057 | radical SAM/SPASM system GeoRSP |