Genome Property Definition Page
Accession | GenProp1044 |
Name | Transposon components |
Type | METAPATH |
Description | This property collects transposases and related integrases. |
JCVI Role | Transposon functions |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
87kDa Transposase | 87kDa | YES | PF12596 (HMM): 87kDa Transposase | |
hermes transposase DNA-binding domain | Hermes | YES | PF10683 (HMM): hermes transposase DNA-binding domain | |
IS1 transposase | IS1 | YES | PF03400 (HMM): IS1 transposase | |
IS 150 transposase orfA | IS150 | YES | 2920 (RULE_BASE) | |
transposase C of IS166 homeodomain | IS166_C | YES | PF13007 (HMM): IS166 homeodomain transposase C | |
IS200 like transposase (Transposase_17) | IS200 | YES | PF01797 (HMM): transposase IS200 like | |
transposase, IS4 family | IS4 | YES | PF01609 (HMM): transposase, IS4 family | |
insertion element 4 transposase N-terminal | IS4_N | YES | PF13006 (HMM): insertion element 4 transposase N-terminal | |
transposase, IS605 OrfB family | IS605-B | YES | PF01385 (HMM): transposase, IS605 family TIGR01766 (HMM): transposase, IS605 OrfB family | |
Transposase IS66 family | IS66 | YES | PF03050 (HMM): IS66 family element, transposase | |
putative helix-turn-helix domain of transposase IS66 | IS66_HTH | YES | PF13005 (HMM): IS66 family transposase zinc-finger binding domain | |
archaeal putative transposase ISC1217 | ISC1217 | YES | PF04693 (HMM): archaeal putative transposase ISC1217 | |
ISPsy8, transposase OrfA | ISPsy8 | YES | 2916 (RULE_BASE) | |
integrase core domain protein | Igr-core | YES | PF00665 (HMM): integrase core domain | |
MULE transposase domain | MULE | YES | PF10551 (HMM): MULE transposase domain | |
PD-(D/E)XK nuclease family transposase | PDDEXK | YES | PF12784 (HMM): PD-(D/E)XK nuclease family transposase | |
Tc3 transposase | Tc3 | YES | PF11427 (HMM): Tc3 transposase | |
Tc5 transposase C-terminal domain | Tc5_C | YES | PF04236 (HMM): Tc5 transposase C-terminal domain | |
Tc5 transposase DNA-binding domain | Tc5_DNA | YES | PF03221 (HMM): Tc5 transposase DNA-binding domain | |
Tn3 transposase DDE domain | Tn3-DDE | YES | PF01526 (HMM): Tn3 transposase DDE domain | |
Transposase Tn5 dimerisation domain | Tn5_dim | YES | PF02281 (HMM): transposase Tn5 dimerization domain | |
PFAM Transposase_8 (IS3 family) | Ts8-IS3 | YES | PF01527 (HMM): transposase | |
Transposase_1, includes mariner | Tsp_1 | YES | PF01359 (HMM): transposase (partial DDE domain) | |
Transposase_12, DDE_Tnp_ISL3 | Tsp_12 | YES | PF01610 (HMM): transposase | |
Transposase_14, HTH_Tnp_IS630 | Tsp_14 | YES | PF01710 (HMM): transposase | |
transposase, IS116/IS110/IS902 family | Tsp_19 | YES | PF02371 (HMM): transposase, IS116/IS110/IS902 family | |
transposase family Tnp2 | Tsp_21 | YES | PF02992 (HMM): transposase family Tnp2 | |
TNP1/EN/SPM transposase | Tsp_23 | YES | PF03017 (HMM): TNP1/EN/SPM transposase | |
Transposase_32, Putative transposase, Y2_Tnp | Tsp_32 | YES | PF04986 (HMM): putative transposase | |
Transposase_35, putative transposase DNA-binding domain, OrfB_Zn_ribbon | Tsp_35 | YES | PF07282 (HMM): putative transposase DNA-binding domain | |
Transposase_36, Rhodopirellula transposase, DDE_Tnp_ISAZ013 | Tsp_36 | YES | PF07592 (HMM): Rhodopirellula transposase DDE domain | |
Transposase_37, transposase protein, Tnp_P_element | Tsp_37 | YES | PF12017 (HMM): transposase protein | |
Transposase_38, ISXO2-like transposase domain | Tsp_38 | YES | PF12762 (HMM): ISXO2-like transposase domain | |
Transposase_9, DEDD_Tnp_IS110 | Tsp_9 | YES | PF01548 (HMM): transposase | |
bacteriophage Mu transposase | Tsp_Mu | YES | PF02914 (HMM): bacteriophage Mu transposase | |
Mu transposase, C-terminal | Tsp_MuC | YES | PF09299 (HMM): Mu transposase, C-terminal | |
MuDR family transposase | Tsp_MuDR | YES | PF03108 (HMM): MuDR family transposase | |
plant transposase, Ptta/En/Spm family | Tsp_Ptta | YES | PF03004 (HMM): plant transposase, Ptta/En/Spm family | |
HTH_Tnp_Tc3_2, C. elegans, mariner related | Tsp_Tc | YES | PF01498 (HMM): transposase | |
transposase, putative, N-terminal domain | Tsp_Teng | YES | TIGR01765 (HMM): transposase, putative, N-terminal domain | |
Zn_ribbon_3, transposase zinc-ribbon domain, Zn_Tnp_IS1595 | Tsp_Zn3 | YES | PF12760 (HMM): transposase zinc-ribbon domain | |
putative transposase, YhgA-like | YhgA-lk | YES | PF04754 (HMM): putative transposase, YhgA-like TIGR01784 (HMM): conserved hypothetical protein | |
transposase, mutator family | mutator | YES | PF00872 (HMM): transposase, mutator family |