Genome Property Definition Page
Accession | GenProp0857 |
Name | anchored repeat-class ABC transporter, P. acnes type |
Type | SYSTEM |
Description | Model TIGR03769 describes a protein region that occurs several times per genome in several Actinobacteria. Typically, it occurs once in an ABC transporter substrate binding protein and two to three times in a neighboring gene that is anchored to the Gram-positive cell wall by a sortase/LPXTG system. This genome property describes the three genes of the ABC transporter cassette and the neighboring LPXTG-anchored repeat protein. This system is analogous to the NEAT domain system found in some pathogenic Firmicutes. |
JCVI Role | Unknown substrate |
Parent Property | GenProp0069: cell surface component GenProp0071: transport |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
anchored repeat ABC transporter, ATP-binding subunit | artA | YES | TIGR03771 (HMM): anchored repeat-type ABC transporter, ATP-binding subunit | |
anchored repeat ABC transporter, permease subunit | artP | YES | TIGR03770 (HMM): anchored repeat-type ABC transporter, permease subunit | |
anchored repeat ABC transporter, anchored relay protein | artR | YES | TIGR03773 (HMM): putative ABC transporter-associated repeat protein | |
anchored repeat ABC transporter, substrate-binding subunit | artS | YES | TIGR03772 (HMM): anchored repeat ABC transporter, substrate-binding protein | |
actinobacterial surface-anchored domain protein | art_rpt | YES | TIGR03769 (HMM): actinobacterial surface-anchored protein domain |
Parent Properties
Accession | Name |
---|---|
GenProp0069 | cell surface component |
GenProp0071 | transport |
Sibling Properties
Accession | Name |
---|---|
GenProp0007 | flagella |
GenProp0012 | outer membrane |
GenProp0022 | S-layer |
GenProp0056 | type IV pilus |
GenProp0062 | capsule |
GenProp0158 | peptidoglycan(murein) biosynthesis |
GenProp0297 | lipopolysaccharide biosynthesis |
GenProp0326 | protein sorting system, PEP-CTERM/exosortase (generic) |
GenProp0626 | protein sorting system, sortase type, LPXTG/SrtA class |
GenProp0664 | protein sorting system, sortase type, SrtB class |
GenProp0725 | outer membrane protein assembly complex |
GenProp0811 | S-layer homology domain-mediated cell wall binding |
GenProp0847 | exosporium |
GenProp0859 | protein sorting system, proteobacterial dedicated sortase type |
GenProp0179 | protein transport |
GenProp0180 | small molecule transport |
GenProp0489 | F-type conjugation system |
GenProp0649 | heterocyst-related ABC exporter DevBCA |
GenProp0821 | putative Na:solute symporter two-gene cassette |
GenProp0895 | alcohol ABC transporter, PedABC-type |
GenProp0941 | TonB-dependent nutrient uptake pairs, RagAB/SusCD type |
GenProp1094 | energy-coupling factor transporters |