Genome Property Definition Page

Nameanchored repeat-class ABC transporter, P. acnes type
DescriptionModel TIGR03769 describes a protein region that occurs several times per genome in several Actinobacteria. Typically, it occurs once in an ABC transporter substrate binding protein and two to three times in a neighboring gene that is anchored to the Gram-positive cell wall by a sortase/LPXTG system. This genome property describes the three genes of the ABC transporter cassette and the neighboring LPXTG-anchored repeat protein. This system is analogous to the NEAT domain system found in some pathogenic Firmicutes.
JCVI RoleUnknown substrate
Parent PropertyGenProp0069: cell surface component
GenProp0071: transport

Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
anchored repeat ABC transporter, ATP-binding subunitartAYESTIGR03771 (HMM): anchored repeat-type ABC transporter, ATP-binding subunit
anchored repeat ABC transporter, permease subunitartPYESTIGR03770 (HMM): anchored repeat-type ABC transporter, permease subunit
anchored repeat ABC transporter, anchored relay proteinartRYESTIGR03773 (HMM): putative ABC transporter-associated repeat protein
anchored repeat ABC transporter, substrate-binding subunitartSYESTIGR03772 (HMM): anchored repeat ABC transporter, substrate-binding protein
actinobacterial surface-anchored domain proteinart_rptYESTIGR03769 (HMM): actinobacterial surface-anchored protein domain

Parent Properties
GenProp0069cell surface component

Sibling Properties
GenProp0012outer membrane
GenProp0056type IV pilus
GenProp0158peptidoglycan(murein) biosynthesis
GenProp0297lipopolysaccharide biosynthesis
GenProp0326protein sorting system, PEP-CTERM/exosortase (generic)
GenProp0626protein sorting system, sortase type, LPXTG/SrtA class
GenProp0664protein sorting system, sortase type, SrtB class
GenProp0725outer membrane protein assembly complex
GenProp0811S-layer homology domain-mediated cell wall binding
GenProp0859protein sorting system, proteobacterial dedicated sortase type
GenProp0179protein transport
GenProp0180small molecule transport
GenProp0489F-type conjugation system
GenProp0649heterocyst-related ABC exporter DevBCA
GenProp0821putative Na:solute symporter two-gene cassette
GenProp0895alcohol ABC transporter, PedABC-type
GenProp0941TonB-dependent nutrient uptake pairs, RagAB/SusCD type
GenProp1094energy-coupling factor transporters