Genome Property Definition Page

Accession

GenProp0855

Name

integrating conjugative element, PFGI-1 class

Type

SYSTEM

Description

This Genome Property represents a collection of mostly uncharacterized proteins typical of integrative conjugative elements (ICE) in the class of PFGI-1 of Pseudomonas fluorescens Pf-5. Defining HMMs for this property closely follow the scope of PFL_4697 (TIGR03747), one of a number of component families that occur only in this context and can serve as a marker for the system.

JCVI Role

Plasmid functions

Parent Property

GenProp0076: DNA handling

Literature References

[ 1 ] Mavrodi DV, Loper JE, Paulsen IT, Thomashow LS Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 2009 Jan 13;9:8. PMID 19144133
[ 2 ] Beaber JW, Hochhut B, Waldor MK Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae. J Bacteriol. 2002 Aug;184(15):4259-69. PMID 12107144

Components

Parent Properties

Accession	Name
GenProp0076	DNA handling

Sibling Properties

Accession	Name
GenProp0018	natural transformation
GenProp0056	type IV pilus
GenProp0115	DNA repair
GenProp0198	ruvABC Holliday junction complex
GenProp0311	competence-related genes
GenProp0489	F-type conjugation system
GenProp0490	Ti-type conjugation system
GenProp0699	DNA gyrase
GenProp0851	integration host factor
GenProp0858	conjugative transposon, Bacteroides type

Step Name	Step Num	Required	Evidence (Method)
integrating conjugative element ParB-related protein	PFL4666	YES	TIGR03764 (HMM): integrating conjugative element, PFGI_1 class, ParB family protein
integrating conjugative element protein, PFL_4669 family	PFL4669	YES	TIGR03761 (HMM): integrating conjugative element protein, PFL_4669 family
integrating conjugative element protein PilL, PFGI-1 class	PFL4675	YES	TIGR03748 (HMM): integrating conjugative element protein PilL, PFGI-1 class
integrating conjugative element protein PFL4693	PFL4693	YES	TIGR03759 (HMM): integrating conjugative element protein, PFL_4693 family
integrating conjugative element protein, PFL4695 family	PFL4695	YES	TIGR03765 (HMM): integrating conjugative element protein, PFL_4695 family
integrating conjugative element TraD protein, PFGI-1 class	PFL4696	YES	TIGR03754 (HMM): conjugative coupling factor TraD, PFGI-1 class
integrating conjugative element membrane protein PFL4697	PFL4697	YES	TIGR03747 (HMM): integrating conjugative element membrane protein, PFL_4697 family
integrating conjugative element protein, RAQPRD family	PFL4700	YES	TIGR01690 (HMM): integrative conjugative element protein, RAQPRD family
integrating conjugative element protein membrane PFL4701	PFL4701	YES	TIGR03758 (HMM): integrating conjugative element protein, PFL_4701 family
integrating conjugative element membrane protein PFL4702	PFL4702	YES	TIGR03745 (HMM): integrating conjugative element membrane protein, PFL_4702 family
integrating conjugative element protein, PFL4703 family	PFL4703	YES	TIGR03746 (HMM): integrating conjugative element protein, PFL_4703 family
integrating conjugative element protein, PFL4704 family	PFL4704	YES	TIGR03749 (HMM): integrating conjugative element protein, PFL_4704 family
integrating conjugative element protein, PFL4705 family	PFL4705	YES	TIGR03752 (HMM): integrating conjugative element protein, PFL_4705 family
conjugative transfer ATPase, PFL_4706 family	PFL4706	YES	TIGR03744 (HMM): conjugative transfer ATPase, PFL_4706 family
integrating conjugative element protein PFL4709	PFL4709	YES	TIGR03757 (HMM): integrating conjugative element protein, PFL_4709 family
integrating conjugative element protein, PFL4710 family	PFL4710	YES	TIGR03756 (HMM): integrating conjugative element protein, PFL_4710 family
integrating conjugative element protein, PFL4711 family	PFL4711	YES	TIGR03755 (HMM): integrating conjugative element protein, PFL_4711 family
integrating conjugative element relaxase, PFGI-1 class	PFL4751	YES	TIGR03760 (HMM): integrating conjugative element relaxase, PFGI-1 class
conjugative transfer region protein, TIGR03750	p47202.1	NO	TIGR03750 (HMM): conjugative transfer region protein, TIGR03750 family
conjugative transfer region protein, TIGR03751 family	p47205.1	NO	TIGR03751 (HMM): conjugative transfer region lipoprotein, TIGR03751 family