Genome Property Definition Page
Accession | GenProp0832 |
Name | archaeal core gene set, 1 or more per genome |
Type | GUILD |
Description | This set of genes includes those which are found in every archaeal genome but may be present in multiple copies generally or in greater than 5% of genomes. An evaluation of 32 publicly available bacterial genomes found greater than 95% having at least one copy of each of these genes. |
Parent Property | GenProp0067: quantitative content |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
transcription factor S | aTF-S | YES | TIGR01384 (HMM): transcription factor S | |
tyrosyl-tRNA synthetase | tyrS | YES | TIGR00234 (HMM): tyrosine--tRNA ligase |
Parent Properties
Accession | Name |
---|---|
GenProp0067 | quantitative content |
Sibling Properties
Accession | Name |
---|---|
GenProp0003 | count of DNA molecules |
GenProp0004 | count of predicted proteins |
GenProp0005 | count of tRNAs |
GenProp0020 | HMM hit percentage |
GenProp0085 | DNA GC content |
GenProp0086 | DNA size (megabases) |
GenProp0108 | amino acid abundance (order) |
GenProp0122 | protein average length |
GenProp0134 | functional gene clustering - property level |
GenProp0152 | DNA dinucleotide thermophily metric RR+YY-RY-YR |
GenProp0495 | sequenced plasmids |
GenProp0799 | bacterial core gene set, exactly 1 per genome |
GenProp0800 | bacterial core gene set, 1 or more per genome |
GenProp0805 | number of ambiguous nucleotide characters |
GenProp0815 | archaeal-only core gene set |
GenProp0831 | archaeal core gene set, exactly 1 per genome |