Genome Property Definition Page

Namebacterial core gene set, 1 or more per genome
DescriptionThis set of genes includes those which are found in every bacterial genome but may be present in multiple copies generally or in greater than 5% of genomes. An evaluation of 311 publicly available bacterial genomes found greater than 95% having at least one copy of each of these genes.
Parent PropertyGenProp0067: quantitative content
Literature References
[ 1 ]Makarova KS, Ponomarev VA, Koonin EV  Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins.  Genome Biol. 2001;2(9):RESEARCH 0033.  PMID 11574053

Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
chaperonin GroSGroESYESPF00166 (HMM): chaperonin GroS
ATP synthase F1, alpha subunitatpAYESTIGR00962 (HMM): ATP synthase F1, alpha subunit
replicative DNA helicasednaBYESTIGR00665 (HMM): replicative DNA helicase
DNA polymerase III, alpha subunitdnaEYESTIGR00594 (HMM): DNA polymerase III, alpha subunit
translation elongation factor PefpYESTIGR00038 (HMM): translation elongation factor P
phosphopyruvate hydratase, enolaseenoYESTIGR01060 (HMM): phosphopyruvate hydratase
translation elongation factor GfusAYESTIGR00484 (HMM): translation elongation factor G
glutamyl-tRNA synthetasegltXYESTIGR00464 (HMM): glutamate--tRNA ligase
serine hydroxymethyltransferaseglyAYESPF00464 (HMM): glycine hydroxymethyltransferase
Class I heat shock protein (TCP-1/cpn60 chaperonin family)groELYESPF00118 (HMM): TCP-1/cpn60 chaperonin family
ATP-dependent metallopeptidase HflBhflBYESTIGR01241 (HMM): ATP-dependent metallopeptidase HflB
translation initiation factor IF-1infAYESTIGR00008 (HMM): translation initiation factor IF-1
lysyl-tRNA synthetaselysSYESTIGR00467 (HMM): lysine--tRNA ligase
TIGR00499 (HMM): lysine--tRNA ligase
methionine adenosyltransferasemetKYESTIGR01034 (HMM): methionine adenosyltransferase
ribose-phosphate diphosphokinaseprsAYESTIGR01251 (HMM): ribose-phosphate diphosphokinase
ribosomal protein L31rpmEYESTIGR00105 (HMM): ribosomal protein bL31
ribosomal protein L33rpmGYESTIGR01023 (HMM): ribosomal protein bL33
ribosomal protein S14rpsNYESPF00253 (HMM): ribosomal protein uS14
single-strand binding proteinssbYESTIGR00621 (HMM): single-stranded DNA-binding protein
tryptophanyl-tRNA synthetasetrpSYESTIGR00233 (HMM): tryptophan--tRNA ligase
thioredoxintrxAYESTIGR01068 (HMM): thioredoxin
translation elongation factor TutufAYESTIGR00485 (HMM): translation elongation factor Tu
membrane protein insertase, YidC/Oxa1 familyyidCYESTIGR03592 (HMM): membrane protein insertase, YidC/Oxa1 family

Parent Properties
GenProp0067quantitative content

Sibling Properties
GenProp0003count of DNA molecules
GenProp0004count of predicted proteins
GenProp0005count of tRNAs
GenProp0020HMM hit percentage
GenProp0085DNA GC content
GenProp0086DNA size (megabases)
GenProp0108amino acid abundance (order)
GenProp0122protein average length
GenProp0134functional gene clustering - property level
GenProp0152DNA dinucleotide thermophily metric RR+YY-RY-YR
GenProp0495sequenced plasmids
GenProp0799bacterial core gene set, exactly 1 per genome
GenProp0805number of ambiguous nucleotide characters
GenProp0815archaeal-only core gene set
GenProp0831archaeal core gene set, exactly 1 per genome
GenProp0832archaeal core gene set, 1 or more per genome