Genome Property Definition Page
Accession | GenProp0799 |
Name | bacterial core gene set, exactly 1 per genome |
Type | GUILD |
Description | This set of genes includes those which are generally found exactly one to a bacterial genome and tend to exhibit little to no lateral gene transfer events. An evaluation of 311 publicly available bacterial genomes found greater than 95% having exactly one copy of each of these genes. In certain cases, such as with glycyl-tRNA synthetase, one or more separate homofunctional gene families may combine to completely cover all bacterial genomes. |
Parent Property | GenProp0067: quantitative content |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
Alanyl-tRNA synthetase | alaS | YES | TIGR00344 (HMM): alanine--tRNA ligase | |
Arginyl-tRNA synthetase | argS | YES | PF00750 (HMM): arginine--tRNA ligase | |
Aspartyl-tRNA synthetase | aspS | YES | TIGR00459 (HMM): aspartate--tRNA ligase | |
Obg family GTPase CgtA | cgtA | YES | TIGR02729 (HMM): Obg family GTPase CgtA | |
dephospho-CoA kinase | coaE | YES | TIGR00152 (HMM): dephospho-CoA kinase | |
cysteinyl-tRNA synthetase | cysS | YES | TIGR00435 (HMM): cysteine--tRNA ligase | |
chromosomal replication initiator protein DnaA | dnaA | YES | TIGR00362 (HMM): chromosomal replication initiator protein DnaA | |
DNA primase | dnaG | YES | TIGR01391 (HMM): DNA primase | |
chaperone protein DnaK | dnaK | YES | TIGR02350 (HMM): chaperone protein DnaK | |
DNA polymerase III, beta subunit | dnaN | YES | TIGR00663 (HMM): DNA polymerase III, beta subunit | |
DNA polymerase III, subunits gamma and tau | dnaX | YES | TIGR02397 (HMM): DNA polymerase III, subunit gamma and tau | |
ribosome-associated GTPase EngA | engA | YES | TIGR03594 (HMM): ribosome-associated GTPase EngA | |
GTP-binding protein Era | era | YES | TIGR00436 (HMM): GTP-binding protein Era | |
signal recognition particle protein | ffh | YES | TIGR00959 (HMM): signal recognition particle protein | |
methionyl-tRNA formyltransferase | fmt | YES | TIGR00460 (HMM): methionyl-tRNA formyltransferase | |
ribosome recycling factor | frr | YES | TIGR00496 (HMM): ribosome recycling factor | |
signal recognition particle-docking protein FtsY | ftsY | YES | TIGR00064 (HMM): signal recognition particle-docking protein FtsY | |
glycyl-tRNA synthetase | glyS | YES | TIGR00389 (HMM): glycine--tRNA ligase TIGR00388 (HMM): glycine--tRNA ligase, alpha subunit | |
guanylate kinase | gmk | YES | TIGR03263 (HMM): guanylate kinase | |
co-chaperone GrpE | grpE | YES | PF01025 (HMM): co-chaperone GrpE | |
DNA gyrase, A subunit | gyrA | YES | TIGR01063 (HMM): DNA gyrase, A subunit | |
DNA gyrase, B subunit | gyrB | YES | TIGR01059 (HMM): DNA gyrase, B subunit | |
histidyl-tRNA synthetase | hisS | YES | TIGR00442 (HMM): histidine--tRNA ligase | |
isoleucyl-tRNA synthetase | ileS | YES | TIGR00392 (HMM): isoleucine--tRNA ligase | |
translation initiation factor IF-2 | infB | YES | TIGR00487 (HMM): translation initiation factor IF-2 | |
translation initiation factor IF-3 | infC | YES | TIGR00168 (HMM): translation initiation factor IF-3 | |
dimethyladenosine transferase | ksgA | YES | TIGR00755 (HMM): ribosomal RNA small subunit methyltransferase A | |
GTP-binding protein LepA | lepA | YES | TIGR01393 (HMM): elongation factor 4 | |
leucyl-tRNA synthetase | leuS | YES | TIGR00396 (HMM): leucine--tRNA ligase | |
DNA ligase, NAD-dependent | ligA | YES | TIGR00575 (HMM): DNA ligase, NAD-dependent | |
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | mnmA | YES | TIGR00420 (HMM): tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | |
MraW methylase family | mraW | YES | PF01795 (HMM): MraW methylase family | |
transcription termination factor NusA | nusA | YES | TIGR01953 (HMM): transcription termination factor NusA | |
transcription termination/antitermination factor NusG | nusG | YES | TIGR00922 (HMM): transcription termination/antitermination factor NusG | |
phosphoglycerate kinase | pgk | YES | PF00162 (HMM): phosphoglycerate kinase | |
phenylalanyl-tRNA synthetase, alpha subunit | pheS | YES | TIGR00468 (HMM): phenylalanine--tRNA ligase, alpha subunit | |
phenylalanyl-tRNA synthetase, beta subunit | pheT | YES | TIGR00471 (HMM): phenylalanine--tRNA ligase, beta subunit TIGR00472 (HMM): phenylalanine--tRNA ligase, beta subunit | |
peptide chain release factor 1 | prfA | YES | TIGR00019 (HMM): peptide chain release factor 1 | |
prolyl-tRNA synthetase | proS | YES | TIGR00408 (HMM): proline--tRNA ligase TIGR00409 (HMM): proline--tRNA ligase | |
CTP synthase | pyrG | YES | TIGR00337 (HMM): CTP synthase | |
recA protein | recA | YES | TIGR02012 (HMM): protein RecA | |
ribosome-binding factor A | rfbA | YES | TIGR00082 (HMM): ribosome-binding factor A | |
ribonuclease III | rnc | YES | TIGR02191 (HMM): ribonuclease III | |
ribosomal protein L1 | rplA | YES | TIGR01169 (HMM): ribosomal protein uL1 | |
ribosomal protein L2 | rplB | YES | TIGR01171 (HMM): ribosomal protein uL2 | |
ribosomal protein L3 | rplC | YES | PF00297 (HMM): ribosomal protein uL3 | |
ribosomal protein L4 | rplD | YES | PF00573 (HMM): ribosomal protein uL4 | |
ribosomal protein L5 | rplE | YES | PF00281 (HMM): ribosomal protein uL5 | |
ribosomal protein L6 | rplF | YES | PF00347 (HMM): ribosomal protein uL6 | |
ribosomal protein L9 | rplI | YES | TIGR00158 (HMM): ribosomal protein bL9 | |
ribosomal protein L10 | rplJ | YES | PF00466 (HMM): ribosomal protein uL10 | |
ribosomal protein L11 | rplK | YES | TIGR01632 (HMM): ribosomal protein uL11 | |
ribosomal protein L7/L12 | rplL | YES | TIGR00855 (HMM): ribosomal protein bL12 | |
ribosomal protein L13 | rplM | YES | TIGR01066 (HMM): ribosomal protein uL13 | |
ribosomal protein L14 | rplN | YES | TIGR01067 (HMM): ribosomal protein uL14 | |
ribosomal protein L15 | rplO | YES | TIGR01071 (HMM): ribosomal protein uL15 | |
ribosomal protein L16 | rplP | YES | TIGR01164 (HMM): ribosomal protein uL16 | |
ribosomal protein L17 | rplQ | YES | TIGR00059 (HMM): ribosomal protein bL17 | |
ribosomal protein L18 | rplR | YES | TIGR00060 (HMM): ribosomal protein uL18 | |
ribosomal protein L19 | rplS | YES | TIGR01024 (HMM): ribosomal protein bL19 | |
ribosomal protein L20 | rplT | YES | TIGR01032 (HMM): ribosomal protein bL20 | |
ribosomal protein L21 | rplU | YES | TIGR00061 (HMM): ribosomal protein bL21 | |
ribosomal protein L22 | rplV | YES | TIGR01044 (HMM): ribosomal protein uL22 | |
ribosomal protein L23 | rplW | YES | PF00276 (HMM): ribosomal protein uL23 | |
ribosomal protein L24 | rplX | YES | TIGR01079 (HMM): ribosomal protein uL24 | |
ribosomal protein L27 | rpmA | YES | TIGR00062 (HMM): ribosomal protein bL27 | |
ribosomal protein L28 | rpmB | YES | TIGR00009 (HMM): ribosomal protein bL28 | |
ribosomal protein L29 | rpmC | YES | TIGR00012 (HMM): ribosomal protein uL29 | |
ribosomal protein L32 | rpmF | YES | TIGR01031 (HMM): ribosomal protein bL32 | |
ribosomal protein L34 | rpmH | YES | TIGR01030 (HMM): ribosomal protein bL34 | |
ribosomal protein L35 | rpmI | YES | TIGR00001 (HMM): ribosomal protein bL35 | |
DNA-directed RNA polymerase, alpha subunit | rpoA | YES | TIGR02027 (HMM): DNA-directed RNA polymerase, alpha subunit | |
DNA-directed RNA polymerase, beta subunit | rpoB | YES | TIGR02013 (HMM): DNA-directed RNA polymerase, beta subunit | |
DNA-directed RNA polymerase, beta' or beta'' subunit | rpoC | YES | TIGR02386 (HMM): DNA-directed RNA polymerase, beta' subunit TIGR02387 (HMM): DNA-directed RNA polymerase, gamma subunit | |
ribosomal protein S2 | rpsB | YES | TIGR01011 (HMM): ribosomal protein uS2 | |
ribosomal protein S3 | rpsC | YES | TIGR01009 (HMM): ribosomal protein uS3 | |
ribosomal protein S4 | rpsD | YES | TIGR01017 (HMM): ribosomal protein uS4 | |
ribosomal protein S5 | rpsE | YES | TIGR01021 (HMM): ribosomal protein uS5 | |
ribosomal protein S6 | rpsF | YES | TIGR00166 (HMM): ribosomal protein bS6 | |
ribosomal protein S7 | rpsG | YES | TIGR01029 (HMM): ribosomal protein uS7 | |
ribosomal protein S8 | rpsH | YES | PF00410 (HMM): ribosomal protein uS8 | |
ribosomal protein S9 | rpsI | YES | PF00380 (HMM): ribosomal protein uS9 | |
ribosomal protein S10 | rpsJ | YES | TIGR01049 (HMM): ribosomal protein uS10 | |
ribosomal protein S11 | rpsK | YES | PF00411 (HMM): ribosomal protein uS11 | |
ribosomal protein S12 | rpsL | YES | TIGR00981 (HMM): ribosomal protein uS12 | |
ribosomal protein S13 | rpsM | YES | PF00416 (HMM): ribosomal protein uS13 | |
ribosomal protein S15 | rpsO | YES | TIGR00952 (HMM): ribosomal protein uS15 | |
ribosomal protein S16 | rpsP | YES | TIGR00002 (HMM): ribosomal protein bS16 | |
ribosomal protein S17 | rpsQ | YES | PF00366 (HMM): ribosomal protein uS17 | |
ribosomal protein S18 | rpsR | YES | TIGR00165 (HMM): ribosomal protein bS18 | |
ribosomal protein S19 | rpsS | YES | TIGR01050 (HMM): ribosomal protein uS19 | |
ribosomal protein S20 | rpsT | YES | TIGR00029 (HMM): ribosomal protein bS20 | |
preprotein translocase, SecA subunit | secA | YES | TIGR00963 (HMM): preprotein translocase, SecA subunit | |
preprotein translocase, SecE subunit | secE | YES | TIGR00964 (HMM): preprotein translocase, SecE subunit | |
preprotein translocase, SecG subunit | secG | YES | TIGR00810 (HMM): preprotein translocase, SecG subunit | |
preprotein translocase, SecY subunit | secY | YES | TIGR00967 (HMM): preprotein translocase, SecY subunit | |
seryl-tRNA synthetase | serS | YES | TIGR00414 (HMM): serine--tRNA ligase | |
SmpB protein | smpB | YES | TIGR00086 (HMM): SsrA-binding protein | |
threonyl-tRNA synthetase | thrS | YES | TIGR00418 (HMM): threonine--tRNA ligase | |
trigger factor | tig | YES | TIGR00115 (HMM): trigger factor | |
tRNA(Ile)-lysidine synthetase | tilS | YES | TIGR02432 (HMM): tRNA(Ile)-lysidine synthetase | |
tRNA threonylcarbamoyladenosine modification protein TsaD | tsaD | YES | TIGR03723 (HMM): tRNA threonylcarbamoyl adenosine modification protein TsaD | |
translation elongation factor Ts | tsf | YES | TIGR00116 (HMM): translation elongation factor Ts | |
tyrosyl-tRNA synthetase | tyrS | YES | TIGR00234 (HMM): tyrosine--tRNA ligase | |
excinuclease ABC, B subunit | uvrB | YES | TIGR00631 (HMM): excinuclease ABC subunit B | |
valyl-tRNA synthetase | valS | YES | TIGR00422 (HMM): valine--tRNA ligase | |
16S rRNA maturation RNase YgeY | ybeY | YES | TIGR00043 (HMM): rRNA maturation RNase YbeY | |
GTP-binding protein YchF | ychF | YES | TIGR00092 (HMM): GTP-binding protein YchF |
Parent Properties
Accession | Name |
---|---|
GenProp0067 | quantitative content |
Sibling Properties
Accession | Name |
---|---|
GenProp0003 | count of DNA molecules |
GenProp0004 | count of predicted proteins |
GenProp0005 | count of tRNAs |
GenProp0020 | HMM hit percentage |
GenProp0085 | DNA GC content |
GenProp0086 | DNA size (megabases) |
GenProp0108 | amino acid abundance (order) |
GenProp0122 | protein average length |
GenProp0134 | functional gene clustering - property level |
GenProp0152 | DNA dinucleotide thermophily metric RR+YY-RY-YR |
GenProp0495 | sequenced plasmids |
GenProp0800 | bacterial core gene set, 1 or more per genome |
GenProp0805 | number of ambiguous nucleotide characters |
GenProp0815 | archaeal-only core gene set |
GenProp0831 | archaeal core gene set, exactly 1 per genome |
GenProp0832 | archaeal core gene set, 1 or more per genome |