Genome Property Definition Page
Accession | GenProp0714 |
Name | galactarate utilization via tartronate semi-aldehyde |
Type | SYSTEM |
Description | D-galactarate (D-Mucic acid, 2,3,4,5-tetrahydroxyhexanedioic acid) may be utilized by this pathway involving the lyase GarL which produces pyruvate and tartronate semi-aldehyde (which may then be furter converted to 3-phosphoglycerate). |
Parent Property | GenProp0142: catabolism |
Gene Ontology Term | GO:0019582: D-galactarate catabolic process (biological_process) |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
galactarate dehydratase (4.2.1.42) | GarD | YES | PF04295 (HMM): D-galactarate dehydratase/altronate hydrolase, C-terminal | GO:0019582: D-galactarate catabolic process |
glycerate kinase (2.7.1.31) | GarK | YES | TIGR00045 (HMM-CLUST): glycerate kinase | GO:0019582: D-galactarate catabolic process |
5-dehydro-4-deoxy-D-glucarate lyase (4.1.2.20) | GarL | YES | TIGR03239 (HMM): 2-dehydro-3-deoxyglucarate aldolase | GO:0019582: D-galactarate catabolic process |
tartronate semialdehyde reductase (1.1.1.60) | GarR | YES | TIGR01505 (HMM): 2-hydroxy-3-oxopropionate reductase | GO:0019582: D-galactarate catabolic process |
possible clustered epimerase | epim? | NO | PF01263 (MANUAL): aldose 1-epimerase | GO:0019582: D-galactarate catabolic process |
D-galactarate transporter, putative | transp | NO | TIGR00786 (HMM-CLUST): TRAP transporter, DctM subunit PF04290 (HMM-CLUST): TRAP transporter, DctQ-like membrane protein TIGR00787 (HMM-CLUST): TRAP transporter solute receptor, DctP family TIGR00893 (HMM-CLUST): D-galactonate transporter TIGR00786 (HMM-CLUST): TRAP transporter, DctM subunit | GO:0019582: D-galactarate catabolic process GO:0019582: D-galactarate catabolic process GO:0019582: D-galactarate catabolic process GO:0019582: D-galactarate catabolic process GO:0019582: D-galactarate catabolic process |
Parent Properties
Accession | Name |
---|---|
GenProp0142 | catabolism |
Sibling Properties
Accession | Name |
---|---|
GenProp0055 | polyhydroxyalkanoic acids |
GenProp0141 | galactose-6-phosphate degradation via tagatose-6-phosphate |
GenProp0156 | cyanophycin-like storage polymers |
GenProp0168 | glycogen system |
GenProp0210 | phenylacetic acid catabolism |
GenProp0231 | 4-hydroxyphenylacetate degradation |
GenProp0233 | GABA utilization |
GenProp0238 | 2-aminoethylphosphonate catabolism to acetaldehyde |
GenProp0239 | propionyl-CoA catabolism |
GenProp0241 | phosphonate catabolism |
GenProp0271 | trehalose utilization |
GenProp0272 | pyruvate fermentation to acetoin |
GenProp0273 | protocatechuate degradation to beta-ketoadipate |
GenProp0283 | beta-ketoadipate degradation to succinyl-CoA and acetyl-CoA |
GenProp0294 | ethanolamine degradation proteinaceous organelle |
GenProp0457 | rhamnose catabolism |
GenProp0458 | fucose catabolism |
GenProp0461 | utilization of deoxynucleosides |
GenProp0653 | ectoine catabolism |
GenProp0674 | malonate decarboxylase |
GenProp0686 | allantoin catabolism to glyoxalate and urea |
GenProp0687 | allantoin catabolism to oxamate and carbamoyl-phosphate |
GenProp0688 | urate catabolism to allantoin |
GenProp0691 | glycolysis |
GenProp0693 | fructose utilization as fructose-1,6-bisphosphate |
GenProp0694 | glucose utilization as fructose-1,6-bisphosphate |
GenProp0700 | purine catabolism via urate, xanthine and allantoin |
GenProp0702 | benzoyl-CoA reductase |
GenProp0703 | 4-hydroxybenzoyl-CoA reductase |
GenProp0706 | cyclohexa-1,5-diene-1-carbonyl-CoA to 3-hydroxypimelyl-CoA, dch/had/oah pathway |
GenProp0708 | catechol meta-cleavage pathway |
GenProp0709 | benzoate catabolism BoxABC pathway |
GenProp0711 | catechol ortho-cleavage upper pathway |
GenProp0715 | galactarate utilization via 2-oxoglutarate semialdehyde |
GenProp0716 | glucarate utilization via tartronate semi-aldehyde |
GenProp0717 | glucarate utilization via 2-oxoglutarate semialdehyde |
GenProp0718 | oxalate degradation |
GenProp0734 | amino acid catabolism |
GenProp0749 | choline sulfate utilization |
GenProp0760 | putrescine degradation to GABA via gamma-glutamylation |
GenProp0763 | nicotinate fermentation to pyruvate and propionate |
GenProp0810 | encapsulin proteinaceous organelle |
GenProp0813 | pyrimidine utilization operon, RutABCDEFGR |
GenProp0902 | quinohemoprotein amine dehydrogenase |
GenProp1071 | myo-inositol catabolism |
GenProp1072 | cyanase system |
GenProp1076 | choline TMA-lyase system |