Genome Property Definition Page

AccessionGenProp0458
Namefucose catabolism
TypeSYSTEM
DescriptionL-fucose to fuculose by 5.3.1.25 L-fucose ketol-isomerase then to L-fuculose 1P by 2.7.1.51 L-fuculokinase then to L-lactaldehyde and glycerone phosphate by 4.1.2.17 L-fuculose-phosphate aldolase Plus transporter to import fucose Plus transcription factors
JCVI RoleSugars
Parent PropertyGenProp0142: catabolism
Literature References
[ 1 ]Chen YM, Zhu Y, Lin EC  The organization of the fuc regulon specifying L-fucose dissimilation in Escherichia coli K12 as determined by gene cloning.  Mol Gen Genet 1987 Dec;210(2):331-7.  PMID 3325779
Gene Ontology TermGO:0015756: fucose transport (biological_process)
GO:0019317: fucose catabolic process (biological_process)
GO:0019317: fucose catabolic process (biological_process)
GO:0019317: fucose catabolic process (biological_process)
GO:0043468: regulation of fucose catabolic process (biological_process)

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
lactaldehyde oxidoreductasesADHNOTIGR02638 (NOCLUST): lactaldehyde reductase
PF00465 (HMM-CLUST): alcohol dehydrogenase, iron-containing		GO:0019317: fucose catabolic process
GO:0019317: fucose catabolic process
L-fuculose-phosphate aldolaseald_aseYESTIGR01086 (HMM): L-fuculose phosphate aldolase
PF00596 (HMM-CLUST): class II aldolase/adducin N-terminal domain		GO:0019317: fucose catabolic process
GO:0019317: fucose catabolic process
L-fucose isomerasefuc_isoYESTIGR01089 (HMM): L-fucose isomeraseGO:0019317: fucose catabolic process
L-fuculokinasefuc_kinYESTIGR02628 (HMM): L-fuculokinase
PF00370 (HMM-CLUST): FGGY family of carbohydrate kinases, N-terminal domain		GO:0019317: fucose catabolic process
GO:0019317: fucose catabolic process
clustered regulatory genesregulatNOPF00455 (HMM-CLUST): DeoR C-terminal sensor domain
PF00165 (HMM-CLUST): transcriptional regulator, AraC family
PF00392 (HMM-CLUST): bacterial regulatory protein, GntR family		GO:0019317: fucose catabolic process
GO:0043468: regulation of fucose catabolic process
GO:0019317: fucose catabolic process
GO:0043468: regulation of fucose catabolic process
GO:0019317: fucose catabolic process
GO:0043468: regulation of fucose catabolic process
fucose transport componentstranspoYESTIGR00885 (HMM): L-fucose:H+ symporter permease
PF05025 (HMM-CLUST): RbsD/FucU transport protein family		GO:0019317: fucose catabolic process
GO:0015756: fucose transport
GO:0019317: fucose catabolic process
GO:0015756: fucose transport

Parent Properties
AccessionName
GenProp0142catabolism


Sibling Properties
AccessionName
GenProp0055polyhydroxyalkanoic acids
GenProp0141galactose-6-phosphate degradation via tagatose-6-phosphate
GenProp0156cyanophycin-like storage polymers
GenProp0168glycogen system
GenProp0210phenylacetic acid catabolism
GenProp02314-hydroxyphenylacetate degradation
GenProp0233GABA utilization
GenProp02382-aminoethylphosphonate catabolism to acetaldehyde
GenProp0239propionyl-CoA catabolism
GenProp0241phosphonate catabolism
GenProp0271trehalose utilization
GenProp0272pyruvate fermentation to acetoin
GenProp0273protocatechuate degradation to beta-ketoadipate
GenProp0283beta-ketoadipate degradation to succinyl-CoA and acetyl-CoA
GenProp0294ethanolamine degradation proteinaceous organelle
GenProp0457rhamnose catabolism
GenProp0461utilization of deoxynucleosides
GenProp0653ectoine catabolism
GenProp0674malonate decarboxylase
GenProp0686allantoin catabolism to glyoxalate and urea
GenProp0687allantoin catabolism to oxamate and carbamoyl-phosphate
GenProp0688urate catabolism to allantoin
GenProp0691glycolysis
GenProp0693fructose utilization as fructose-1,6-bisphosphate
GenProp0694glucose utilization as fructose-1,6-bisphosphate
GenProp0700purine catabolism via urate, xanthine and allantoin
GenProp0702benzoyl-CoA reductase
GenProp07034-hydroxybenzoyl-CoA reductase
GenProp0706cyclohexa-1,5-diene-1-carbonyl-CoA to 3-hydroxypimelyl-CoA, dch/had/oah pathway
GenProp0708catechol meta-cleavage pathway
GenProp0709benzoate catabolism BoxABC pathway
GenProp0711catechol ortho-cleavage upper pathway
GenProp0714galactarate utilization via tartronate semi-aldehyde
GenProp0715galactarate utilization via 2-oxoglutarate semialdehyde
GenProp0716glucarate utilization via tartronate semi-aldehyde
GenProp0717glucarate utilization via 2-oxoglutarate semialdehyde
GenProp0718oxalate degradation
GenProp0734amino acid catabolism
GenProp0749choline sulfate utilization
GenProp0760putrescine degradation to GABA via gamma-glutamylation
GenProp0763nicotinate fermentation to pyruvate and propionate
GenProp0810encapsulin proteinaceous organelle
GenProp0813pyrimidine utilization operon, RutABCDEFGR
GenProp0902quinohemoprotein amine dehydrogenase
GenProp1071myo-inositol catabolism
GenProp1072cyanase system
GenProp1076choline TMA-lyase system