Genome Property Definition Page
| Accession | GenProp0208 |
| Name | phage: major features |
| Type | GUILD |
| Description | Protein families related to head morphogenesis, DNA packaging, tail structure, and lysis. Now adding some for replication, although these may be hard to tell from plasmid replication proteins. |
| JCVI Role | Prophage functions |
| Parent Property | GenProp0066: selfish genetic elements |
Components
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
|---|---|---|---|---|
| major capsid protein | capsid | YES | TIGR01551 (HMM): phage major capsid protein, P2 family TIGR01554 (HMM): phage major capsid protein, HK97 family PF03864 (HMM): phage major capsid protein E PF05125 (HMM): phage major capsid protein, P2 family PF02305 (HMM): capsid protein PF11651 (HMM): coat protein, P22 family TIGR04387 (HMM): major capsid protein, N4-gp56 family | |
| any phage holin | holin | YES | TIGR01592 (HMM): holin, SPP1 family TIGR01594 (HMM): phage holin, lambda family TIGR01598 (HMM): holin, phage phi LC3 family TIGR01606 (HMM): holin, BlyA family TIGR01673 (HMM): phage holin, LL-H family PF05102 (HMM): holin, BlyA family TIGR01593 (HMM): toxin secretion/phage lysis holin PF06946 (HMM): phage holin PF04550 (HMM): phage holin family 2 PF05106 (HMM): phage holin family PF04688 (HMM): phage lysis protein, holin PF04531 (HMM): bacteriophage holin | |
| major tail protein | mjtail | NO | TIGR01603 (HMM): phage major tail protein, phi13 family TIGR02126 (HMM): phage major tail protein, TP901-1 family PF04630 (HMM): phage major tail protein PF06199 (HMM): phage major tail protein 2 | |
| various structural components | other | NO | PF04865 (HMM): baseplate J-like protein TIGR01600 (HMM): phage minor tail protein L PF06528 (HMM): phage tail protein, P2 GpE family TIGR01611 (HMM): phage major tail tube protein TIGR01644 (HMM): phage baseplate assembly protein V TIGR01715 (HMM): phage tail assembly protein T TIGR01634 (HMM): phage tail protein I PF04984 (HMM): phage tail sheath protein PF04985 (HMM): phage tail tube protein FII PF05100 (HMM): phage minor tail protein L PF05126 (HMM): TIGR01563 (HMM): putative phage head-tail adaptor TIGR01635 (HMM): phage virion morphogenesis protein PF05371 (HMM): phage major coat protein, Gp8 TIGR01665 (HMM): phage minor structural protein, N-terminal region TIGR01674 (HMM): phage minor tail protein G PF05929 (HMM): phage capsid scaffolding protein (GPO) serine peptidase PF05354 (HMM): phage head-tail attachment PF05926 (HMM): phage head completion protein GPL PF06222 (HMM): phage tail assembly chaperone PF04233 (HMM): phage Mu protein F-like protein TIGR01641 (HMM): phage head morphogenesis protein, SPP1 gp7 family PF05396 (HMM): phage T7 capsid assembly protein PF06810 (HMM): phage minor structural protein GP20 | |
| portal protein | portal | YES | PF04860 (HMM): phage portal protein TIGR01537 (HMM): phage portal protein, HK97 family TIGR01538 (HMM): phage portal protein, SPP1 family TIGR01539 (HMM): phage portal protein, lambda family TIGR01540 (HMM): phage portal protein, PBSX family TIGR01542 (HMM): phage portal protein, putative, A118 family PF05133 (HMM): SPP1 Gp6-like phage portal protein PF05136 (HMM): phage portal protein, lambda family | |
| prohead protease | protase | YES | PF03420 (HMM): prohead core protein protease, T4 family TIGR01543 (HMM): phage prohead protease, HK97 family PF04586 (HMM): caudovirus prohead protease | |
| replication proteins | repli | NO | TIGR01610 (HMM): phage replication protein O, N-terminal domain TIGR03600 (HMM): phage replicative helicase, DnaB family | |
| more tail proteins | tail | NO | PF03335 (HMM): phage tail fiber repeat PF03406 (HMM): phage tail fiber repeat PF03903 (HMM): phage T4 tail fibre PF03906 (HMM): phage T7 tail fiber protein TIGR01633 (HMM): putative phage tail component, N-terminal domain PF06894 (HMM): bacteriophage lambda minor tail protein GpG PF06893 (HMM): PF06891 (HMM): P2 phage tail completion protein R (GpR) PF05065 (HMM): phage capsid family PF06141 (HMM): phage minor tail protein U PF06763 (HMM): prophage minor tail protein Z PF05939 (HMM): phage minor tail protein PF06274 (HMM): PF06805 (HMM): bacteriophage lambda tail assembly protein I PF05489 (HMM): phage tail protein X TIGR02242 (HMM): phage tail protein domain | |
| tail tape measure protein | tape_m | NO | TIGR01541 (HMM): phage tail tape measure protein, lambda family TIGR01760 (HMM): phage tail tape measure protein, TP901 family, core region PF06791 (HMM): prophage tail length tape measure protein TIGR02675 (HMM): tape measure domain PF06120 (HMM): tail length tape measure protein | |
| terminase, large subunit | trm_lg | YES | TIGR01547 (HMM): phage terminase, large subunit, PBSX family PF03354 (HMM): putative phage terminase, large subunit PF04466 (HMM): phage terminase large subunit PF05876 (HMM): phage terminase large subunit GpA PF06056 (HMM): putative terminase, ATPase subunit, gpP-like PF03237 (HMM): Terminase-like family | |
| terminase, small subunit | trm_sm | YES | PF03592 (HMM): terminase small subunit TIGR01558 (HMM): putative phage terminase, small subunit, P27 family PF05119 (HMM): phage terminase, small subunit PF05944 (HMM): phage small terminase subunit PF07141 (HMM): putative bacteriophage terminase small subunit | |
| uncharacterized phage proteins | unchar | NO | PF04883 (HMM): putative phage tail-component, HK97-gp10 family PF07030 (HMM): phage conserved hypothetical protein PF07026 (HMM): phage conserved hypothetical protein TIGR01560 (HMM): uncharacterized phage protein (possible DNA packaging) TIGR01725 (HMM): phage protein, HK97 gp10 family TIGR01618 (HMM): phage nucleotide-binding protein TIGR01630 (HMM): phage uncharacterized protein, C-terminal domain TIGR01669 (HMM): phage uncharacterized protein, XkdX family TIGR01671 (HMM): phage conserved hypothetical protein TIGR01671 TIGR01555 (HMM): phage-associated protein, HI1409 family PF07409 (HMM): phage protein GP46 PF07066 (HMM): lactococcus phage M3 protein TIGR02220 (HMM): phage conserved hypothetical protein, C-terminal domain TIGR02215 (HMM): phage conserved hypothetical protein, phiE125 gp8 family TIGR02216 (HMM): phage conserved hypothetical protein TIGR02681 (HMM): phage regulatory protein, Rha family |
Parent Properties
| Accession | Name |
|---|---|
| GenProp0066 | selfish genetic elements |
Sibling Properties
| Accession | Name |
|---|---|
| GenProp0009 | integrative genetic element |
| GenProp0010 | inteins |
| GenProp0024 | group I intron |
| GenProp0025 | group II intron |
| GenProp0050 | prophage regions |
| GenProp0226 | integron |
| GenProp0321 | toxin-antitoxin system, type II |
| GenProp0476 | protein-coding palindromic elements |
| GenProp1091 | toxin-antitoxin system, type I |
| GenProp1092 | toxin-antitoxin system, type III |